Because of the presence of the L101 inductor the FET source goes about 0.5V negative when the FET turns off. So the bootstrapping should work ok. Simulation with an IR2110 model says it does, and the last scope shot above also show Vs going slightly negative.Is your bootstrap capacitor getting charged?
Normally, it would be charged when the low-side MOSFET switches on, but you have no low-side MOSFET because it is not a synchronous converter.












