My opinion is that in those cases the data itself may be binary but the transmission is not unless the delays are fixed as the delays in between bits in a digital transmition or between fixed width frames. Otherwise they carry information and are part of the transmission code so it's not binary.Timing is intrinsic to binary comms too.
Many IR remote binary comms use a long period for a 1 bit, and a short period for the zero bit, with an even longer pause delineating the individual bytes. The entire decoding system is based on timing.
But the data and comms are still officially binary. It doesn't become "trinary" because there are pauses between the binary data blocks.
Other standard binary data comms send a data block of 8 binary bits, separated by a pause, and data packets of X bytes separated by an even longer pause. If you include the 2 pause lengths in the base (as WBahn has done) then you would say it is now base 4 or "quaternary". But it's not, it is still binary data.
And I don't see a difference between separating bytes and packets with two different pauses, and separating letters and words with two different pauses. It does not increase the base of the data.