You have variable pulse positioning from timing marks unless you also vary the width of the strobe pulse at each compartment. While that's possible, it tends to blur the strobe image if too long and dim the image if too short if used instead of a optimized LED current for the strobe width.
From my simple POV demo of a single strobe LED. Top trace timing pulses, bottom trace time varying strobe pulses to timing mark.
Four strobe line demo.
I used this RGBA led with current limiting resistors to keep the peak forward current below the Max rating.
https://github.com/nsaspook/hd_pov/blob/xc8/ov4zrgba-1210202.pdf
https://github.com/nsaspook/hd_pov/tree/xc8
Is that your clock on youtube? I have seen that before. Mine is going to be a little different. I have numbers carved into a disk I made from plexiglass. Light shines through the numbers.