The total VA won't change as it is the scalar product |Voltage|x|Current|, but the total power will as it is the average of the instantaneous voltage multiplied by the instantaneous current.I've been playing with simulations of both delta and wye circuits and can't get the total VA to drop more than 50% below the highest total VA by just swapping wires/phases around. So I don't think miswiring is the cause of your problem.
One reversed CT will reduce the calculated power to a third of the correct value.
As the CTs and voltage measurement transformers will be on the cables leaving the turbine, not on the windings themselves , whether it is star or delta is immaterial. They are identical Thévenin sources.
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