I am looking for a 555/556 circuit that runs a 5 minute delay then produces a single 3 second negative pulse (pull-down). Would I use two separate timers and if so how would I interface the two?
This will not be easy. It requires a large resistor and capacitor and the leakage of the cap needs to be small. I would use a micro controller ( very often my advice ).
Using a different device as suggested is probably your best option but if you really want to use a 555 or 556 and avoid the capacitor leakage problem, you can use large value ceramic capacitors and multiple timing stages.
A CD4541 has an oscillator and a divider allowing a small reasonable cap to be used to set very long time intervals. You may even be able to get the 3 sec delay out of it too by playing with the output and reset lines.
The CD4541 is one of those oddball chips that don't quite fit any category but turn out to be damn useful.
The capacitor leakage problem is overstated in a major sort of way. I have used a 555's for timers that lasted for hours using large caps. You can see what is happening by putting a simple DVM across the cap and watching the voltage over time.
For an inverted signal such as the OP suggests a transistor will likely also be needed.
The problem is not just getting the values but getting in the right values and stable over time. As often happens an Arduino is a fairly easy solution that typically gives great accuracy and flexibility. Not very expensive when you consider price per hour of entertainment, in fact for one off projects on all but the leanest budgets is an easy decision to defend. At some point you pretty much have to learn microcontrollers.