Not without knowing more about the black box part. You "should" be able to simply switch the three leads to the main SCR's and run under the new controller. Even if the old box is trying to send signals, it shouldn't bother the small SCR's to have no load.
You might want to use a three pole double throw toggle with a guard on it to make sure it doesn't get bumped while testing. An accidental change in load could lead to engine disassembly.
You might want to use a three pole double throw toggle with a guard on it to make sure it doesn't get bumped while testing. An accidental change in load could lead to engine disassembly.